nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version: 1.4.9
Imports: ape, coda, testit
Suggests: TreeSim, DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat, DAISIE
Published: 2023-08-21
DOI: 10.32614/CRAN.package.nLTT
Author: Thijs Janzen [aut, cre], Richèl J.C. Bilderbeek ORCID iD [aut], Pedro Neves [ctb]
Maintainer: Thijs Janzen <thijsjanzen at>
License: GPL-2
NeedsCompilation: no
In views: Phylogenetics
CRAN checks: nLTT results


Reference manual: nLTT.pdf
Vignettes: How to visualize nLTT values distributions
nltt_diff functions
How to plot multiple nLTTs and their average
How to stretch an nLTT timepoints matrix
Trees with a root edge


Package source: nLTT_1.4.9.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): nLTT_1.4.9.tgz, r-oldrel (arm64): nLTT_1.4.9.tgz, r-release (x86_64): nLTT_1.4.9.tgz, r-oldrel (x86_64): nLTT_1.4.9.tgz
Old sources: nLTT archive

Reverse dependencies:

Reverse suggests: babette, nodeSub, treestats


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