otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).

Version: 0.1.0
Depends: R (≥ 3.1.0), vegan (≥ 2.0-7)
Imports: reshape2 (≥ 1.4), fossil (≥ 0.3.7), reldist (≥ 1.6-6)
Published: 2018-06-19
Author: Sizhong Yang
Maintainer: Sizhong Yang <yanglzu at 163.com>
License: GPL (≥ 3)
URL: https://github.com/camel315/otuSummary
NeedsCompilation: no
CRAN checks: otuSummary results

Downloads:

Reference manual: otuSummary.pdf
Package source: otuSummary_0.1.0.tar.gz
Windows binaries: r-devel: otuSummary_0.1.0.zip, r-devel-gcc8: otuSummary_0.1.0.zip, r-release: otuSummary_0.1.0.zip, r-oldrel: otuSummary_0.1.0.zip
OS X binaries: r-release: otuSummary_0.1.0.tgz, r-oldrel: otuSummary_0.1.0.tgz

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