pcgen: Reconstruction of Causal Networks for Data with Random Genetic Effects

Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm, with specific conditional independence tests and modified orientation rules. pcgen extends the approach of Valente et al. (2010) <doi:10.1534/genetics.109.112979> with reconstruction of direct genetic effects.

Version: 0.2.0
Depends: R (≥ 3.1.0)
Imports: pcalg, graph, Matrix, stats, MASS, utils, Hmisc, methods, lme4, sommer, ggm
Published: 2019-02-18
Author: Willem Kruijer, Pariya Behrouzi, Maria Xose Rodriguez-Alvarez
Maintainer: Pariya Behrouzi <pariya.behrouzi at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: pcgen results

Downloads:

Reference manual: pcgen.pdf
Package source: pcgen_0.2.0.tar.gz
Windows binaries: r-devel: pcgen_0.2.0.zip, r-release: pcgen_0.2.0.zip, r-oldrel: pcgen_0.2.0.zip
OS X binaries: r-release: pcgen_0.2.0.tgz, r-oldrel: pcgen_0.2.0.tgz
Old sources: pcgen archive

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