pedmod: Pedigree Models

Provides functions to estimate mixed probit models using, for instance, pedigree data like in <doi:10.1002/sim.1603>. The models are also commonly called liability threshold models. The approximation is based on direct log marginal likelihood approximations like the randomized Quasi-Monte Carlo suggested by <doi:10.1198/106186002394> with a similar procedure to approximate the derivatives. The minimax tilting method suggested by <doi:10.1111/rssb.12162> is also supported. Graph-based methods are also provided that can be used to simplify pedigrees.

Version: 0.2.2
Depends: R (≥ 3.5.0)
Imports: Rcpp, alabama
LinkingTo: Rcpp, RcppArmadillo, BH, testthat, psqn
Suggests: testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind, kinship2, igraph, TruncatedNormal
Published: 2022-05-27
Author: Benjamin Christoffersen ORCID iD [cre, aut], Alan Genz [cph], Frank Bretz [cph], Bjoern Bornkamp [cph], Torsten Hothorn [cph], Christophe Dutang [cph], Diethelm Wuertz [cph], R-core [cph], Leo Belzile [cph], Zdravko Botev [cph]
Maintainer: Benjamin Christoffersen <boennecd at gmail.com>
BugReports: https://github.com/boennecd/pedmod/issues
License: GPL-3
URL: https://github.com/boennecd/pedmod
NeedsCompilation: yes
SystemRequirements: C++17
Materials: NEWS
CRAN checks: pedmod results

Documentation:

Reference manual: pedmod.pdf
Vignettes: partitioning families
pedmod

Downloads:

Package source: pedmod_0.2.2.tar.gz
Windows binaries: r-devel: pedmod_0.2.2.zip, r-release: pedmod_0.2.1.zip, r-oldrel: pedmod_0.2.1.zip
macOS binaries: r-release (arm64): pedmod_0.2.1.tgz, r-oldrel (arm64): pedmod_0.2.1.tgz, r-release (x86_64): pedmod_0.2.0.tgz, r-oldrel (x86_64): pedmod_0.2.0.tgz
Old sources: pedmod archive

Linking:

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