pedmod: Pedigree Models
Provides functions to estimate mixed probit models using, for instance, pedigree data like in <doi:10.1002/sim.1603>. The models are also commonly called liability threshold models. The approximation is based on direct log marginal likelihood approximations like the randomized Quasi-Monte Carlo suggested by <doi:10.1198/106186002394> with a similar procedure to approximate the derivatives. The minimax tilting method suggested by <doi:10.1111/rssb.12162> is also supported. Graph-based methods are also provided that can be used to simplify pedigrees.
| Version: | 0.2.3 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp, alabama |
| LinkingTo: | Rcpp, RcppArmadillo, BH, testthat, psqn |
| Suggests: | testthat, mvtnorm, xml2, knitr, rmarkdown, R.rsp, abind, kinship2, igraph, TruncatedNormal, numDeriv |
| Published: | 2022-06-22 |
| Author: | Benjamin Christoffersen
 [cre, aut],
Alan Genz [cph],
Frank Bretz [cph],
Bjoern Bornkamp [cph],
Torsten Hothorn [cph],
Christophe Dutang [cph],
Diethelm Wuertz [cph],
R-core [cph],
Leo Belzile [cph],
Zdravko Botev [cph] |
| Maintainer: | Benjamin Christoffersen <boennecd at gmail.com> |
| BugReports: | https://github.com/boennecd/pedmod/issues |
| License: | GPL-3 |
| URL: | https://github.com/boennecd/pedmod |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Materials: | NEWS |
| CRAN checks: | pedmod results |
Documentation:
| Reference manual: | pedmod.pdf |
| Vignettes: |
partitioning families pedmod |
Downloads:
| Package source: | pedmod_0.2.3.tar.gz |
| Windows binaries: | r-devel: pedmod_0.2.3.zip, r-release: pedmod_0.2.3.zip, r-oldrel: pedmod_0.2.3.zip |
| macOS binaries: | r-release (arm64): pedmod_0.2.3.tgz, r-oldrel (arm64): pedmod_0.2.3.tgz, r-release (x86_64): pedmod_0.2.3.tgz, r-oldrel (x86_64): pedmod_0.2.3.tgz |
| Old sources: | pedmod archive |
Linking:
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