phyloregion: Biogeographic Regionalization and Spatial Conservation

Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1101/2020.02.12.945691>. It is based on the conceptual work in Daru et al.(2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).

Version: 1.0.2
Depends: R (≥ 3.6.0)
Imports: ape, phangorn, Matrix, betapart, fastmatch, parallel, methods, raster, data.table, colorspace, cluster, rgeos, vegan, sp, igraph
Suggests: tinytest, knitr, mapproj
Published: 2020-03-30
Author: Barnabas H. Daru ORCID iD [aut, cre, cph], Piyal Karunarathne [aut], Klaus Schliep ORCID iD [aut], Xiaobei Zhao [ctb], Albin Sandelin [ctb]
Maintainer: Barnabas H. Daru <darunabas at gmail.com>
BugReports: https://github.com/darunabas/phyloregion/issues
License: AGPL-3
URL: https://github.com/darunabas/phyloregion, https://darunabas.github.io/phyloregion/index.html
NeedsCompilation: no
Citation: phyloregion citation info
Materials: README NEWS
CRAN checks: phyloregion results

Downloads:

Reference manual: phyloregion.pdf
Vignettes: phyloregion-benchmark
phyloregion-intro
Package source: phyloregion_1.0.2.tar.gz
Windows binaries: r-devel: phyloregion_1.0.2.zip, r-release: phyloregion_1.0.2.zip, r-oldrel: phyloregion_1.0.2.zip
macOS binaries: r-release: phyloregion_1.0.2.tgz, r-oldrel: phyloregion_1.0.2.tgz

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