picante: Integrating Phylogenies and Ecology

Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.

Version: 1.7
Depends: ape, vegan, nlme, methods
Suggests: brglm, circular, corpcor, quantreg
Published: 2018-05-14
Author: Steven W. Kembel, David D. Ackerly, Simon P. Blomberg, Will K. Cornwell, Peter D. Cowan, Matthew R. Helmus, Helene Morlon, Campbell O. Webb
Maintainer: Steven W. Kembel <steve.kembel at gmail.com>
License: GPL-2
NeedsCompilation: yes
Citation: picante citation info
Materials: README
CRAN checks: picante results

Downloads:

Reference manual: picante.pdf
Vignettes: Data and analysis in picante
Package source: picante_1.7.tar.gz
Windows binaries: r-devel: picante_1.7.zip, r-release: picante_1.7.zip, r-oldrel: picante_1.7.zip
OS X binaries: r-release: picante_1.7.tgz, r-oldrel: picante_1.7.tgz
Old sources: picante archive

Reverse dependencies:

Reverse depends: CommEcol, idar, RPANDA, spacodiR
Reverse imports: betapart, DAMOCLES, lefse, metricTester, nodiv, PCPS, pez, recluster
Reverse suggests: cati, EcoIndR, ecolottery, enveomics.R

Linking:

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