pirouette: Create a Bayesian Posterior from a Phylogeny

Theoretical biologists are interested in measuring the extent at which we can measure the truth. This package allows to create a Bayesian posterior from a phylogeny that depicts the true evolutionary relationships. The given and true phylogeny can than be compared to the posterior phylogenies. Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020) "Quantifying the impact of an inference model in Bayesian phylogenetics" <doi:10.1111/2041-210X.13514>.

Version: 1.6.5
Depends: babette (≥ 2.1.1)
Imports: ape, beautier (≥ 2.6.2), beastier (≥ 2.4.6), DDD, forcats, magrittr, mauricer (≥ 2.5), mcbette (≥ 1.7), nodeSub, phangorn, phytools, plyr, pryr, readr, stringr, TESS, tibble, tidyr, tracerer (≥ 2.0.2), xtable
Suggests: devtools, dplyr, ggplot2, knitr, lintr, markdown, nLTT (≥ 1.4.3), rappdirs, rmarkdown, Rmpfr, testthat (≥ 2.1.0)
Published: 2022-10-18
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre], Giovanni Laudanno [aut], Thijs Janzen [ctb]
Maintainer: Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl>
BugReports: https://github.com/richelbilderbeek/pirouette/issues
License: GPL-3
URL: https://github.com/richelbilderbeek/pirouette/
NeedsCompilation: no
SystemRequirements: BEAST2 (https://www.beast2.org/)
Citation: pirouette citation info
CRAN checks: pirouette results

Documentation:

Reference manual: pirouette.pdf
Vignettes: Create A Twin Tree
pirouette demo
Experiment
Partial function evaluation in pirouette
Tutorial
Twinning

Downloads:

Package source: pirouette_1.6.5.tar.gz
Windows binaries: r-devel: pirouette_1.6.5.zip, r-release: pirouette_1.6.5.zip, r-oldrel: pirouette_1.6.5.zip
macOS binaries: r-release (arm64): pirouette_1.6.5.tgz, r-oldrel (arm64): pirouette_1.6.5.tgz, r-release (x86_64): pirouette_1.6.5.tgz, r-oldrel (x86_64): pirouette_1.6.5.tgz
Old sources: pirouette archive

Linking:

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