popkin: Estimate Kinship and FST under Arbitrary Population Structure

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

Version: 1.0.5
Imports: Rcpp (≥ 0.12.10), RColorBrewer, graphics
LinkingTo: Rcpp, RcppEigen
Suggests: BEDMatrix, testthat, knitr, rmarkdown, lfa
Published: 2018-01-26
Author: Alejandro Ochoa [aut, cre], John D. Storey [aut]
Maintainer: Alejandro Ochoa <ochoa at princeton.edu>
BugReports: https://github.com/StoreyLab/popkin/issues
License: GPL-3
URL: https://github.com/StoreyLab/popkin/
NeedsCompilation: yes
Citation: popkin citation info
Materials: NEWS
CRAN checks: popkin results

Downloads:

Reference manual: popkin.pdf
Vignettes: Estimate Kinship and FST under Arbitrary Population Structure
Package source: popkin_1.0.5.tar.gz
Windows binaries: r-devel: popkin_1.0.5.zip, r-release: popkin_1.0.5.zip, r-oldrel: popkin_1.0.5.zip
OS X binaries: r-release: popkin_1.0.5.tgz, r-oldrel: not available
Old sources: popkin archive

Reverse dependencies:

Reverse suggests: bnpsd

Linking:

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