protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.

Version: 0.2.45
Depends: R (≥ 3.3), methods
Imports: Rcpp (≥ 0.12.8)
LinkingTo: Rcpp
Suggests: lattice, RUnit, xtable
Published: 2017-11-17
Author: Christian Panse ORCID iD [aut, cre], Jonas Grossmann ORCID iD [aut], Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp at>
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11
Citation: protViz citation info
Materials: README NEWS
CRAN checks: protViz results


Reference manual: protViz.pdf
Vignettes: protViz package poster (in portrait)
Hands-on: Using protViz
Howto find putative ptm marker ion?
Package source: protViz_0.2.45.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: protViz_0.2.45.tgz
OS X Mavericks binaries: r-oldrel: protViz_0.2.45.tgz
Old sources: protViz archive

Reverse dependencies:

Reverse suggests: deisotoper


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