qtl2pleio: Testing Pleiotropy in Multiparental Populations

We implement an adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.

Version: 1.2.3
Depends: R (≥ 3.1)
Imports: dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, stringr, tibble, parallel, Matrix
LinkingTo: Rcpp, testthat, RcppEigen
Suggests: covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools, qtl2
Published: 2019-11-05
Author: Frederick J Boehm ORCID iD [aut, cre]
Maintainer: Frederick J Boehm <frederick.boehm at gmail.com>
BugReports: https://github.com/fboehm/qtl2pleio/issues
License: MIT + file LICENSE
URL: https://github.com/fboehm/qtl2pleio
NeedsCompilation: yes
Language: en-US
Citation: qtl2pleio citation info
Materials: README NEWS
CRAN checks: qtl2pleio results

Downloads:

Reference manual: qtl2pleio.pdf
Vignettes: Using HTCondor for bootstrap analysis
Testing pleiotropy v separate QTL in multiparental populations
Recla Analysis
Package source: qtl2pleio_1.2.3.tar.gz
Windows binaries: r-devel: qtl2pleio_1.2.3.zip, r-release: qtl2pleio_1.2.3.zip, r-oldrel: qtl2pleio_1.2.3.zip
OS X binaries: r-release: qtl2pleio_1.2.3.tgz, r-oldrel: qtl2pleio_1.2.3.tgz

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