rSEA: Simultaneous Enrichment Analysis

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.

Version: 2.1.0
Depends: R (≥ 2.10), hommel (≥ 1.4)
Suggests: knitr, rmarkdown
Published: 2019-10-06
Author: Mitra Ebrahimpoor
Maintainer: Mitra Ebrahimpoor <m.ebrahimpoor at lumc.nl>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: rSEA results

Downloads:

Reference manual: rSEA.pdf
Vignettes: rSEA R package
Package source: rSEA_2.1.0.tar.gz
Windows binaries: r-devel: rSEA_2.1.0.zip, r-devel-gcc8: rSEA_2.1.0.zip, r-release: rSEA_2.1.0.zip, r-oldrel: rSEA_2.1.0.zip
OS X binaries: r-release: rSEA_2.1.0.tgz, r-oldrel: rSEA_2.1.0.tgz
Old sources: rSEA archive

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