rmarkdown: Dynamic Documents for R

Convert R Markdown documents into a variety of formats.

Version: 1.6
Depends: R (≥ 3.0)
Imports: tools, utils, knitr (≥ 1.14), yaml (≥ 2.1.5), htmltools (≥ 0.3.5), caTools, evaluate (≥ 0.8), base64enc, jsonlite, rprojroot, methods, stringr (≥ 1.2.0)
Suggests: shiny (≥ 0.11), tufte, testthat, digest, tibble
Published: 2017-06-15
Author: JJ Allaire [aut, cre], Joe Cheng [aut], Yihui Xie [aut], Jonathan McPherson [aut], Winston Chang [aut], Jeff Allen [aut], Hadley Wickham [aut], Aron Atkins [aut], Rob Hyndman [aut], Ruben Arslan [aut], RStudio, Inc. [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), Eli Grey [ctb, cph] (FileSaver library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: JJ Allaire <jj at rstudio.com>
License: GPL-3
URL: http://rmarkdown.rstudio.com
NeedsCompilation: no
SystemRequirements: pandoc (>= 1.12.3) - http://pandoc.org
Materials: NEWS
In views: ReproducibleResearch
CRAN checks: rmarkdown results

Downloads:

Reference manual: rmarkdown.pdf
Package source: rmarkdown_1.6.tar.gz
Windows binaries: r-devel: rmarkdown_1.6.zip, r-release: rmarkdown_1.6.zip, r-oldrel: rmarkdown_1.6.zip
OS X El Capitan binaries: r-release: rmarkdown_1.6.tgz
OS X Mavericks binaries: r-oldrel: rmarkdown_1.6.tgz
Old sources: rmarkdown archive

Reverse dependencies:

Reverse depends: tufterhandout
Reverse imports: adapr, addinslist, apa, BETS, BIGDAWG, blkbox, bookdown, BrailleR, bsplus, caRpools, ChocoLattes, compareGroups, condformat, DataExplorer, dataMaid, FactoInvestigate, fastqcr, flexdashboard, formattable, gistr, Gmisc, GROAN, huxtable, issueReporter, Jdmbs, kableExtra, knitrBootstrap, lazyrmd, learnr, liftr, MendelianRandomization, monographaR, packagedocs, PreKnitPostHTMLRender, prereg, prettydoc, PTXQC, radiant.data, randomForestExplainer, rchallenge, reprex, resumer, revealjs, rmdformats, rmdshower, rticles, RtutoR, sdcMicro, ShinyItemAnalysis, SpatialEpiApp, stremr, swirlify, timevis, tint, tufte, uiucthemes, wallace, xaringan
Reverse suggests: abbyyR, ABC.RAP, ABHgenotypeR, AbSim, ACMEeqtl, acnr, ACSNMineR, adegraphics, adepro, AdhereR, admixturegraph, ADPclust, advclust, afex, ahnr, ahp, ajv, ALA4R, alakazam, alfred, algorithmia, alluvial, alphabetr, alterryx, AMCTestmakeR, ameco, AmyloGram, anchoredDistr, ANLP, AnnotationBustR, anomalyDetection, antaresProcessing, antaresRead, aoos, aop, apaTables, apex, aphid, apricom, aptg, ArchaeoPhases, arsenal, ARTool, aRxiv, aspi, assertable, assignPOP, ASSISTant, asymmetry, atlantistools, attrCUSUM, auk, aurelius, AutoDeskR, autoimage, automultinomial, autothresholdr, aws.alexa, awsjavasdk, AzureML, BacArena, backblazer, backpipe, backShift, bannerCommenter, BAS, base64url, baseballDBR, BatchGetSymbols, BatchMap, batchtools, BaTFLED3D, bayesAB, BayesCombo, bayesDP, BayesianNetwork, BayesianTools, bayesm, bayesmeta, bayesplot, BCellMA, bcRep, bcROCsurface, bdlp, bdscale, beanz, benchmarkme, berryFunctions, bibliometrix, BIEN, bife, bigKRLS, bigQueryR, bikedata, binman, bioimagetools, BioInstaller, biomartr, bioOED, biotic, biwavelet, blscrapeR, bmlm, bnspatial, bodenmiller, BoSSA, bossMaps, boxr, bpa, bpp, BradleyTerryScalable, brglm2, bridgedist, bridgesampling, briskaR, brm, brms, brotli, bssm, BTR, BTYDplus, bunchr, burnr, bytescircle, camsRad, camtrapR, canprot, canvasXpress, captr, carpenter, cartography, casebase, causaldrf, cbsodataR, ccRemover, cdata, cellranger, Census2016, censusapi, censusr, ChainLadder, charlatan, checkmate, checkpoint, chemmodlab, CHNOSZ, CINNA, cIRT, CityWaterBalance, Ckmeans.1d.dp, clarifai, classiFunc, cleanNLP, cleanr, clifro, climbeR, climwin, clubSandwich, clusterhap, clusternomics, ClusterR, ClustGeo, clustRcompaR, ClustVarLV, clustvarsel, cnbdistr, coala, cobalt, cocoreg, codyn, CoFRA, coga, cointmonitoR, cointReg, colf, colordistance, colorpatch, colorplaner, colourpicker, colr, complexity, condir, configr, congressbr, ConR, ContourFunctions, convexjlr, convey, coRanking, Corbi, corr2D, CorrectOverloadedPeaks, CorReg, corrgram, corrr, countyfloods, countytimezones, countyweather, covr, cowbell, cowsay, coxphw, CPBayes, cpr, CRF, crtests, csp, ctmcd, curl, cvequality, cycleRtools, CytobankAPI, D3GB, d3Tree, dams, Dark, dartR, dat, data.table, data.world, datacheckr, dataCompareR, dataMeta, datapasta, dataPreparation, datarobot, datasauRus, datastepr, datastructures, datasus, dbfaker, DBI, DBItest, dbplyr, DCG, ddpcr, deBInfer, decoder, decomposedPSF, deconvolveR, DeLorean, dendextend, dendrometeR, denoiSeq, denovolyzeR, densratio, DEploid, derivmkts, descriptr, desctable, detzrcr, devRate, devtools, dexter, dggridR, dgo, di, diagis, diceR, diffobj, diffpriv, diffrprojects, diffrprojectswidget, diffusr, digest, DiversityOccupancy, DLMtool, dMod, docker, docstring, document, docxtools, DOT, dotwhisker, downsize, dpcR, dplyr, drake, drat, DrBats, DrImpute, DSAIDE, dsrTest, DSsim, DT, dtangle, dtwSat, dwapi, dynamichazard, dynCorr, eAnalytics, earthtones, easyformatr, easyml, easypackages, easyPubMed, easySdcTable, easyVerification, EBASS, ecb, ECctmc, ECharts2Shiny, eclust, ecolottery, ECOSolveR, ecospace, ecr, edarf, edfReader, edfun, edstan, EdSurvey, eechidna, eemR, eeptools, eesim, EfficientMaxEigenpair, EGRET, EGRETci, elasticsearchr, electionsBR, elevatr, EML, EmpiricalCalibration, emuR, ENMeval, enpls, enrichR, enrichwith, ensembleR, enviGCMS, epandist, epicontacts, EpiModel, episensr, episheet, eply, equateIRT, ergm, errorizer, EthSEQ, eulerr, europepmc, eurostat, evaluator, evclass, evclust, eventdataR, EventStudy, exampletestr, exams, excerptr, explor, exploreR, exprso, extremeStat, eyelinker, eyetrackingR, ezec, ezknitr, ezsummary, factorMerger, fakeR, fbar, fcm, fcuk, FeatureHashing, fetchR, ffstream, FFTrees, fiftystater, filematrix, filesstrings, fingertipsR, finreportr, FIT, fitbitScraper, fitur, fivethirtyeight, fixedTimeEvents, flexsurvcure, flextable, FLightR, fmbasics, fmdates, foghorn, fontHind, fontMPlus, forecast, ForecastFramework, forecastHybrid, forestplot, ForestTools, formatR, fourierin, fpCompare, fractional, frailtypack, freesurfer, FSA, fslr, FunChisq, funrar, furniture, futureheatwaves, fuzzr, fuzzyjoin, fuzzywuzzyR, GADMTools, gaiah, gastempt, gatepoints, gbp, GCalignR, GEint, gelnet, genderizeR, genemodel, geneSLOPE, GeneticSubsetter, GenomicTools, geofacet, geohash, geojsonlint, geojsonR, geoknife, geoparser, GERGM, GerminaR, GESE, gesis, getCRUCLdata, GetHFData, GetTDData, GFD, gfer, gfmR, GGally, ggalt, ggCompNet, ggeffects, ggExtra, ggforce, ggformula, ggguitar, GGIR, ggiraph, ggiraphExtra, ggloop, ggmcmc, ggmosaic, ggplot2, ggpmisc, ggpolypath, ggpval, ggQC, ggRandomForests, ggraph, ggrepel, ggsci, ggseas, ggseqlogo, ggsignif, ggspectra, ggswissmaps, ggthemes, ggvis, gifti, gitgadget, githubinstall, givitiR, glmmsr, glmnetUtils, gLRTH, gmailr, gmediation, GMSE, goldi, GoodmanKruskal, googleAnalyticsR, googleAuthR, googleCloudStorageR, googleComputeEngineR, googlesheets, googleway, GOplot, gower, gpg, GPoM, grapes, grattan, greta, grex, gridsample, gridsampler, groupdata2, grpSLOPE, gsloid, GSODR, gsrc, gt4ireval, guess, GUILDS, gunsales, gutenbergr, gWQS, h5, hansard, haploR, haplotyper, HARtools, haven, hddtools, hdnom, hdr, heatmaply, heemod, helixvis, heuristica, HIBPwned, highcharter, highlightHTML, HistData, hmi, hoardeR, hoardr, homomorpheR, hrbrthemes, htmlTable, hts, HTSSIP, httk, httr, humidity, hunspell, HURDAT, hurricaneexposure, HWxtest, hyfo, iadf, IAPWS95, icd, icd9, IceCast, icosa, icpsrdata, ICtest, idem, ids, iemisc, iemiscdata, iemisctext, IGM.MEA, imager, imaginator, imagine, IMIFA, imputeTestbench, IMTest, inbreedR, incadata, incidence, incR, inctools, IncucyteDRC, iNEXT, iNextPD, inferr, Information, infuser, inpdfr, inspectr, intercure, internetarchive, intubate, ipdw, iprior, iptools, isdparser, jaatha, janitor, jcolors, jiebaR, joineR, joineRML, joinXL, jose, JOUSBoost, js, jsonlite, jsonvalidate, jtools, jug, JumpTest, junr, kangar00, kantorovich, kerasR, KernelKnn, keyringr, knitr, KODAMA, KoNLP, KraljicMatrix, KSEAapp, landscapeR, languagelayeR, lans2r, largeVis, later, latex2exp, lavaanPlot, lawn, lazyeval, LBSPR, ldatuning, LDAvis, leaflet.minicharts, LEANR, learningCurve, learnrbook, LEGIT, lemon, lifecontingencies, lifelogr, lightsout, linear.tools, lineup, lingtypology, link2GI, LinkageMapView, lintr, liquidSVM, listWithDefaults, lmem.gwaser, lmem.qtler, lmvar, logisticPCA, logmult, loo, LowWAFOMNX, LowWAFOMSobol, lplyr, lsgl, lspline, LTRCtrees, lumberjack, Luminescence, luzlogr, LW1949, m2b, m2r, macleish, maddison, MADPop, magicfor, magick, MAGNAMWAR, MakefileR, manhattanly, manifestoR, manipulateWidget, MANOVA.RM, mapview, marcher, marinespeed, markmyassignment, markovchain, mason, mateable, matlib, mbbefd, mbgraphic, mcglm, mclust, MCMCvis, mcMST, MDMR, mdpeer, MeanShift, MedDietCalc, Mediana, medicare, MEGENA, Meiosis, memisc, memo, merTools, MESS, metacoder, MetaCycle, metaheur, MetaIntegrator, metaplotr, metaviz, MetProc, mfe, MFKnockoffs, mglR, MIAmaxent, mice, microclass, microplot, milr, miniCRAN, minval, miscset, misreport, mitml, MittagLeffleR, MixSIAR, mize, MLID, mlr, mlrMBO, mMPA, mmpf, mnis, mockery, MODIStsp, modmarg, modules, MOEADr, molaR, Momocs, monkeylearn, MonoPhy, MonteCarlo, morse, mosaic, moveWindSpeed, mpe, mptools, mrbsizeR, mRchmadness, mrgsolve, msaenet, msaR, MSCMT, mscstexta4r, mscsweblm4r, msde, msgl, msgtools, msmtools, mstherm, MTA, mtconnectR, MullerPlot, MultiBD, multipanelfigure, multiplyr, musica, MVLM, mvQuad, mvtboost, mwaved, myTAI, NAM, nandb, naptime, nat, nauf, ncdump, NEArender, neat, neighbr, netCoin, NetRep, NetWeaver, NetworkInference, networktools, neurobase, neurohcp, nhanesA, nhstplot, nlsr, nlstimedist, nLTT, NNLM, NNS, NNTbiomarker, noaastormevents, NoiseFiltersR, nproc, npROCRegression, nucim, nzelect, obAnalytics, oddsratio, oem, officer, olsrr, OmicsPLS, OneR, opencage, openEBGM, OpenImageR, OpenML, openssl, optband, optigrab, optimr, optimus, optiSel, optmatch, ores, origami, osi, osmdata, osmplotr, oXim, packcircles, packrat, padr, pafdR, pageviews, palr, parlitools, parsemsf, partialCI, passport, patentsview, pathological, patternplot, PBD, pcadapt, pdftables, pdSpecEst, peakPick, peakRAM, performanceEstimation, pergola, personalized, pewdata, phangorn, phantom, PhenotypeSimulator, photobiology, phrasemachine, phylocanvas, phylodyn, PhylogeneticEM, phylogram, phylopath, piecewiseSEM, pifpaf, pinbasic, pipeliner, pirate, pivottabler, pixiedust, pkggraph, plater, plotluck, plotly, plumber, pMineR, pointRes, pollen, pollstR, Polychrome, polyPK, polypoly, PopED, popEpi, poppr, popprxl, postGIStools, POUMM, PowerUpR, prcbench, prcr, precrec, predatory, PredictTestbench, PredPsych, prefeR, preprocomb, preprosim, preproviz, preText, PrevMap, printr, prioritylasso, PRISMAstatement, processmapR, processmonitR, prodigenr, profvis, ProliferativeIndex, proportion, propr, PROscorer, PROscorerTools, protr, pseval, ptest, ptstem, pulsar, PWFSLSmoke, pwr, pxweb, qcc, QFASA, qfasar, qte, qtlcharts, qualpalr, qualtRics, quanteda, QuantumClone, queuecomputer, quickReg, qwraps2, r.jive, R2ucare, R6Frame, RAC, RADanalysis, radarchart, radiant, radiomics, radmixture, Radviz, ragtop, rAltmetric, Ramble, randgeo, randomizr, rangeMapper, RankingProject, ratelimitr, raw, RBesT, rbgm, Rborist, rCAT, rccdates, Rcereal, Rcmdr, RcmdrPlugin.FuzzyClust, RcmdrPlugin.KMggplot2, RcmdrPlugin.MA, rcoreoa, RcppHoney, RcppParallel, Rcssplot, rcv, Rd2md, Rd2roxygen, rdefra, Rdice, rdiversity, rdomains, RDota2, rdwd, reactR, readr, readtext, readxl, recexcavAAR, reda, REDCapR, redland, redlistr, rEDM, redux, refimpact, refset, regtools, RegularizedSCA, rehh, ReinforcementLearning, ReIns, remindR, remoter, rentrez, replyr, ReporteRs, represtools, requireR, rerddap, revdbayes, rex, RFinfer, rfishbase, rfml, RGA, RGCCA, rgho, rgl, rhandsontable, RHPCBenchmark, RIA, rich, riem, rinat, ring, RInno, riverdist, rKIN, rlang, Rlda, rmapshaper, RmarineHeatWaves, rmcorr, rmonad, rMouse, RNAseqNet, RndTexExams, rnetcarto, RNewsflow, RNeXML, RNHANES, rnn, rnoaa, roadoi, roahd, robotstxt, RODBCext, rODE, rodeo, rodham, rollply, rolr, rolypoly, roots, rope, ropenaq, ropercenter, rorcid, rosetteApi, rotl, roxygen2, rpatrec, RPEXE.RPEXT, rpivotTable, rpostgisLT, rPref, rprime, rprojroot, rpsftm, rptR, RQGIS, rrefine, rrr, rsample, Rsampling, rsconnect, rscorecard, RSelenium, RSentiment, rslurm, RSQLite, RSSL, rstanarm, rstantools, rsvd, rtdists, rtext, Rtextrankr, rtrie, rtrim, rtweet, rucrdtw, rust, rvest, rwars, RWildbook, RxODE, SADISA, saeRobust, saeSim, samplingDataCRT, SanFranBeachWater, scalpel, scanstatistics, scatterD3, scdhlm, SchemaOnRead, scifigure, scmamp, scoringRules, scphaser, scrm, sdmpredictors, searchConsoleR, secret, seleniumPipes, semver, sensiPhy, SentimentAnalysis, seplyr, SeqKat, sequoia, servr, sfdct, sfinx, sglOptim, sgmcmc, shadow, shazam, SHELF, shiny, shinyFeedback, shinyjqui, shinyjs, shinystan, shrink, sigmoid, signalHsmm, sigr, SimCorMultRes, simmer, simmer.plot, SimMultiCorrData, simPATHy, SimPhe, simputation, simr, simstudy, simulator, sinaplot, sitmo, sizeMat, sjlabelled, sjmisc, skeleSim, skm, slickR, slim, smapr, smcfcs, smooth, snakecase, SobolSequence, sodium, sofa, soilcarbon, sophisthse, sorvi, sp500SlidingWindow, spacyr, spAddins, SpaDES, spaero, spant, sparkline, sparsebn, SparseDC, SpatialPosition, spbabel, spdplyr, spduration, speaq, sperrorest, spiders, spind, splines2, splithalf, spm12r, sppmix, SqlRender, srvyr, ss3sim, SSDM, SSM, SSRMST, stabs, standardize, starmie, statar, statisticalModeling, STEPCAM, Stickbreaker, sticky, stormwindmodel, stplanr, stR, strataG, stringb, stringr, stripless, StructFDR, structree, stubthat, subprocess, SubVis, summarytools, supc, SuperExactTest, SuperGauss, superheat, SuperLearner, surv2sampleComp, surveydata, survRM2, survtmle, svdvis, svglite, SwarmSVM, sweep, sweidnumbr, tableHTML, tableMatrix, tadaatoolbox, TANDEM, tangram, tatoo, taxa, taxlist, taxonomizr, tbl2xts, Tcomp, TeachBayes, teachingApps, templates, tensorr, tensr, testassay, TestFunctions, texPreview, text2vec, textreg, textreuse, textTinyR, themetagenomics, ThreeArmedTrials, tibble, tidygenomics, tidyquant, tidyr, tidyRSS, tidytext, tidyverse, tidyxl, tilegramsR, timekit, timelineR, timeSeq, TippingPoint, TITAN2, titrationCurves, Tlasso, tmap, tokenizers, toOrdinal, TOSTER, toxboot, tpAUC, trackeR, treebase, treespace, trelloR, TriadSim, triebeard, trip, TropFishR, tRophicPosition, tuber, tubern, tutorial, twfy, ukbtools, ukds, ungeneanno, unitizer, unpivotr, unvotes, upmfit, uptasticsearch, usmap, utiml, uwIntroStats, V8, valaddin, validann, validatejsonr, valr, valuer, varband, VarfromPDB, vcfR, vegalite, vein, vembedr, vennLasso, vetr, vfcp, viridis, virustotal, visdat, ViSiElse, vortexR, VSE, vtreat, VWPre, waccR, walker, water, wCorr, wdman, weathermetrics, webglobe, webshot, WhiteStripe, WHO, wicket, widgetframe, wikilake, wikitaxa, wildcard, Wmisc, womblR, wooldridge, wordbankr, wordspace, worrms, wql, wrapr, wrassp, wrswoR, wrswoR.benchmark, xbreed, xesreadR, xgboost, xml2, xyz, yarrr, yCrypticRNAs, zeallot, zebu, Zelig, zFactor, zonator, zooaRch, zooaRchGUI, zoocat
Reverse enhances: dygraphs

Linking:

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