sccca: Single-Cell Correlation Based Cell Type Annotation

Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <doi:10.2307/2982890>).

Version: 0.1.1
Imports: Seurat, dplyr, plyr, scales, HGNChelper, openxlsx
Published: 2024-03-13
Author: Mohamed Soudy [aut, cre], Sophie LE BARS [aut], Enrico Glaab [aut]
Maintainer: Mohamed Soudy <Mohmedsoudy2009 at gmail.com>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: sccca results

Documentation:

Reference manual: sccca.pdf

Downloads:

Package source: sccca_0.1.1.tar.gz
Windows binaries: r-prerel: sccca_0.1.1.zip, r-release: sccca_0.1.1.zip, r-oldrel: sccca_0.1.1.zip
macOS binaries: r-prerel (arm64): sccca_0.1.1.tgz, r-release (arm64): sccca_0.1.1.tgz, r-oldrel (arm64): sccca_0.1.1.tgz, r-prerel (x86_64): sccca_0.1.1.tgz, r-release (x86_64): sccca_0.1.1.tgz
Old sources: sccca archive

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