Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.
Version: |
0.2.0 |
Depends: |
R (≥ 3.5.0) |
Imports: |
Matrix, stats, methods, utils, reshape, igraph, graphics, grid, cli, prettyunits, ggplot2, rlang, Rcpp (≥ 1.0.8) |
LinkingTo: |
Rcpp, RcppEigen |
Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0), Seurat (≥ 5.0.0), glmGamPoi, hdf5r |
Published: |
2024-12-06 |
DOI: |
10.32614/CRAN.package.scregclust |
Author: |
Felix Held [aut,
cre],
Ida Larsson [aut],
Sven Nelander
[aut],
André Armatowski [ctb] |
Maintainer: |
Felix Held <felix.held at gmail.com> |
BugReports: |
https://github.com/scmethods/scregclust/issues |
License: |
GPL (≥ 3) |
URL: |
https://scmethods.github.io/scregclust/,
https://github.com/scmethods/scregclust/ |
NeedsCompilation: |
yes |
Citation: |
scregclust citation info |
Materials: |
README NEWS |
CRAN checks: |
scregclust results [issues need fixing before 2025-01-10] |