Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
| Version: |
6.0 |
| Suggests: |
testthat, SKAT |
| Published: |
2017-05-05 |
| Author: |
Xiaowei Zhan [aut, cre],
Dajiang Liu [aut],
Attractive Chaos [cph] (We have used the following software and made
minimal necessary changes: Tabix, Heng Li (MIT
license). We removed standard IO related functions, e.g. printf,
fprintf ; also changed its un-safe pointer arithmetics.),
Broad Institute / Massachusetts Institute of Technology [cph],
Genome Research Ltd (GRL) [cph] |
| Maintainer: |
Xiaowei Zhan <zhanxw at gmail.com> |
| BugReports: |
https://github.com/zhanxw/seqminer/issues |
| License: |
GPL-2 | GPL-3 | file LICENSE [expanded from: GPL | file LICENSE] |
| Copyright: |
We have used the following software and made minimal
necessary changes: Tabix, Heng Li <lh3@live.co.uk> (MIT
license). We removed standard IO related functions, e.g.
printf, fprintf ; also changed its un-safe pointer arithmetics. |
| URL: |
http://seqminer.genomic.codes |
| NeedsCompilation: |
yes |
| SystemRequirements: |
zlib headers and libraries, optionally also bzip2
and POSIX-compliant regex functions. |
| Citation: |
seqminer citation info |
| Materials: |
README ChangeLog |
| CRAN checks: |
seqminer results |