shinyTempSignal: Explore Temporal Signal of Molecular Phylogenies

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels.

Version: 0.0.2
Depends: R (≥ 3.3.0)
Imports: ape, aTSA, Cairo, config (≥ 0.3.1), forecast, ggplot2, ggpubr, ggtree, golem (≥ 0.3.1), shiny (≥ 1.6.0), shinydashboard, shinyjs, stringr, treeio, TSA
Suggests: attempt, conflicted, DT, glue, htmltools, processx, testthat (≥ 3.0.0), thinkr
Published: 2022-04-14
Author: Guangchuang Yu ORCID iD [aut, cre, cph], Xuanan Zhu [aut], Jianfeng Lin [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: shinyTempSignal results

Documentation:

Reference manual: shinyTempSignal.pdf

Downloads:

Package source: shinyTempSignal_0.0.2.tar.gz
Windows binaries: r-devel: shinyTempSignal_0.0.2.zip, r-release: shinyTempSignal_0.0.2.zip, r-oldrel: shinyTempSignal_0.0.2.zip
macOS binaries: r-release (arm64): shinyTempSignal_0.0.2.tgz, r-oldrel (arm64): shinyTempSignal_0.0.2.tgz, r-release (x86_64): shinyTempSignal_0.0.2.tgz, r-oldrel (x86_64): shinyTempSignal_0.0.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=shinyTempSignal to link to this page.