spider: Species Identity and Evolution in R

Analysis of species limits and DNA barcoding data. Included are functions for generating important summary statistics from DNA barcode data, assessing specimen identification efficacy, testing and optimizing divergence threshold limits, assessment of diagnostic nucleotides, and calculation of the probability of reciprocal monophyly. Additionally, a sliding window function offers opportunities to analyse information across a gene, often used for marker design in degraded DNA studies. Further information on the package has been published in Brown et al (2012) <doi:10.1111/j.1755-0998.2011.03108.x>.

Version: 1.5.0
Imports: ape, pegas, graphics, stats, utils
Suggests: testthat
Published: 2018-02-16
Author: Samuel Brown, Rupert Collins, Stephane Boyer, Marie-Caroline Lefort, Jagoba Malumbres-Olarte, Cor Vink, Rob Cruickshank
Maintainer: Rupert A. Collins <rupertcollins at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: spider citation info
Materials: README NEWS
CRAN checks: spider results


Reference manual: spider.pdf
Package source: spider_1.5.0.tar.gz
Windows binaries: r-prerel: spider_1.5.0.zip, r-release: spider_1.5.0.zip, r-oldrel: spider_1.5.0.zip
OS X binaries: r-prerel: spider_1.5.0.tgz, r-release: spider_1.5.0.tgz
Old sources: spider archive


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