starmie: Population Structure Model Inference and Visualisation

Data structures and methods for manipulating output of genetic population structure clustering algorithms. 'starmie' can parse output from 'STRUCTURE' (see <https://pritchardlab.stanford.edu/structure.html> for details) or 'ADMIXTURE' (see <https://www.genetics.ucla.edu/software/admixture/> for details). 'starmie' performs model selection via information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.

Version: 0.1.2
Depends: R (≥ 3.3.0)
Imports: data.table, readr (≥ 1.0.0), stringr, tidyr, purrr, ggplot2 (≥ 2.1.0), iterpc, combinat, label.switching, proxy, MCL, gridExtra, ggdendro, ggrepel, MCMCpack, parallel, methods, stats
Suggests: testthat, knitr, rmarkdown
Published: 2016-11-07
Author: Gerry Tonkin-Hill [aut], Stuart Lee [cre, aut]
Maintainer: Stuart Lee <lee.s at wehi.edu.au>
BugReports: https://github.com/sa-lee/starmie/issues
License: MIT + file LICENSE
URL: https://github.com/sa-lee/starmie
NeedsCompilation: no
Materials: README
CRAN checks: starmie results

Downloads:

Reference manual: starmie.pdf
Vignettes: starmie Admixture models
starmie Basic Usage
Package source: starmie_0.1.2.tar.gz
Windows binaries: r-devel: starmie_0.1.2.zip, r-release: starmie_0.1.2.zip, r-oldrel: not available
OS X Mavericks binaries: r-release: starmie_0.1.2.tgz, r-oldrel: not available

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