statgenIBD: Calculation of IBD Probabilities
For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
| Version: | 1.0.4 |
| Depends: | R (≥ 3.6) |
| Imports: | ggplot2, Rcpp |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | rmarkdown, knitr, tinytest |
| Published: | 2022-03-07 |
| Author: | Martin Boer  [aut],
Bart-Jan van Rossum
[aut, cre],
Wenhao Li [ctb] |
| Maintainer: | Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: | https://github.com/Biometris/statgenIBD/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| URL: | https://biometris.github.io/statgenIBD/index.html, https://github.com/Biometris/statgenIBD/ |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | statgenIBD results |
Documentation:
| Reference manual: | statgenIBD.pdf |
| Vignettes: |
IBD calculations using statgenIBD |
Downloads:
| Package source: | statgenIBD_1.0.4.tar.gz |
| Windows binaries: | r-devel: statgenIBD_1.0.4.zip, r-release: statgenIBD_1.0.4.zip, r-oldrel: statgenIBD_1.0.4.zip |
| macOS binaries: | r-release (arm64): statgenIBD_1.0.4.tgz, r-oldrel (arm64): statgenIBD_1.0.4.tgz, r-release (x86_64): statgenIBD_1.0.4.tgz, r-oldrel (x86_64): statgenIBD_1.0.4.tgz |
| Old sources: | statgenIBD archive |
Reverse dependencies:
| Reverse imports: | statgenMPP |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=statgenIBD to link to this page.