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The statgenMPP package is developed as an easy-to-use package for QTL mapping in multi-parent populations. The package has many ways of visualizing inputs and results. First Identity By Descent (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. 2021.

remotes::install_github("Biometris/statgenMPP", ref = "develop", dependencies = TRUE)