survival: Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Version: 3.1-7
Priority: recommended
Depends: R (≥ 3.4.0)
Imports: graphics, Matrix, methods, splines, stats, utils
Published: 2019-11-09
Author: Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry at mayo.edu>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2)]
Copyright: see file COPYRIGHTS
URL: https://github.com/therneau/survival
NeedsCompilation: yes
Citation: survival citation info
Materials: NEWS
In views: ClinicalTrials, Econometrics, SocialSciences, Survival
CRAN checks: survival results

Downloads:

Reference manual: survival.pdf
Vignettes: Adjusted Survival Curves
Approximating a Cox Model
Multi-state models and competing risks
Concordance
Multi-state survival curves
Other vignettes
Population contrasts
Splines, plots, and interactions
The survival package
Roundoff error and tied times
Using Time Dependent Covariates
Validation
Package source: survival_3.1-7.tar.gz
Windows binaries: r-devel: survival_3.1-7.zip, r-devel-gcc8: survival_3.1-7.zip, r-release: survival_3.1-7.zip, r-oldrel: survival_3.1-7.zip
OS X binaries: r-release: survival_3.1-7.tgz, r-oldrel: survival_3.1-7.tgz
Old sources: survival archive

Reverse dependencies:

Reverse depends: AdjBQR, AER, AF, ahaz, AHR, AIM, anoint, APtools, BART, bayesDP, BayesMixSurv, bayesSurv, bhm, biostat3, BivarP, BivRec, BMA, bshazard, carcass, cchs, cmprsk, coin, compound.Cox, cond, Copula.Markov.survival, CoxBoost, coxed, coxinterval, coxme, CoxPhLb, coxphSGD, coxphw, CoxRidge, coxrobust, CPE, cr17, crossmatch, crrp, crrSC, csampling, ctqr, currentSurvival, discfrail, distcomp, drgee, DTAT, dynamichazard, dynfrail, dynpred, eha, epiDisplay, epiR, factorial2x2, FamEvent, fitdistrplus, flexPM, flexrsurv, flexsurv, flexsurvcure, frailtyEM, frailtyHL, frailtypack, frailtypack, frailtySurv, gamlss.cens, gamlss.nl, gcerisk, geecure, geneSignatureFinder, glmaag, glmpath, globalboosttest, glrt, goftte, GORCure, greyzoneSurv, GSAgm, GSED, gte, gtx, HCmodelSets, Hmisc, iBST, ICBayes, icenReg, icensBKL, ICGOR, idmTPreg, IDPSurvival, imputeYn, InferenceSMR, InformativeCensoring, interval, invGauss, ipcwswitch, ipflasso, IPWsurvival, isoph, jlctree, JM, JMbayes, joineR, joineRmeta, joineRML, joint.Cox, JointModel, JSM, kaps, kin.cohort, km.ci, kmconfband, lava.tobit, lcmm, LCox, linERR, LncMod, LogicReg, LogrankPower, MapGAM, marg, mexhaz, mfp, mhurdle, MiRKAT, missDeaths, mixor, mma, mmabig, mmc, MMMS, MPLikelihoodWB, MRH, mRMRe, MRsurv, MST, mstate, multcomp, multipleNCC, multistate, NADA, NestedCohort, nlreg, nltm, NPHMC, NPMLENCC, nricens, NSM3, optmatch, OrdFacReg, ordinalgmifs, OTRselect, OutlierDC, p3state.msm, packHV, paf, pamr, parfm, partDSA, pch, penalized, PenCoxFrail, penPHcure, peperr, permGPU, permGS, PHeval, phmm, PIGE, plac, plRasch, PRIMsrc, prognosticROC, PwrGSD, qrcm, qrcmNP, QualInt, RcmdrPlugin.coin, RcmdrPlugin.survival, relsurv, RISCA, risksetROC, rms, RobustAFT, ROC632, ROCt, RPCLR, rprev, rstpm2, season, seawaveQ, selectiveInference, SemiCompRisks, seqDesign, seqMeta, SIMMS, simMSM, smcure, smoothHR, smoothSurv, SNPassoc, sp23design, speff2trial, SPREDA, sptm, ssym, STAND, STAR, stepp, SubgrpID, superpc, surrosurvROC, survAUC, SurvBoost, survBootOutliers, survC1, survexp.fr, survey, Survgini, survIDINRI, survivalMPL, survivalsvm, survJamda, survMisc, SurvRegCensCov, survRM2, survSNP, SurvTrunc, tdROC, TH.data, threg, thregI, time2event, timereg, tnet, TransModel, uniah, winRatioAnalysis, WPC, WR, YPPE, Zelig
Reverse imports: ActFrag, addhazard, aftgee, AICcmodavg, AIM, amt, Ball, bamlss, BayesCTDesign, baytrends, beanz, BeSS, BGPhazard, bhrcr, binequality, Biograph, biospear, blockForest, BNPdensity, BootValidation, BSGW, bujar, c060, cancerGI, carSurv, Cascade, casebase, CatPredi, ccostr, censCov, CeRNASeek, CFC, cg, chngpt, CIEE, ciTools, clespr, clustcurv, cmprskQR, cohorttools, compareGroups, concreg, concurve, condSURV, controlTest, CopulaCenR, CoRpower, Counterfactual, coxphf, coxphMIC, coxrt, CP, CPsurv, CsChange, CutpointsOEHR, Cyclops, DDPGPSurv, DelayedEffect.Design, DStree, DTR, DWreg, DynNom, dynsurv, EGRET, EL2Surv, ELYP, EMA, eNetXplorer, ePCR, Epi, epitab, epoc, equSA, etm, ezcox, factorMerger, fastcmprsk, fastStat, FHtest, fic, finalfit, fmrs, fragilityindex, gamlss, gbm, GenEst, gestate, gfoRmula, ggparty, ggquickeda, ggRandomForests, GJRM, glmBfp, GPSCDF, gravity, greport, gtsummary, gyriq, hdnom, hds, hesim, hoa, hrIPW, ICcalib, ICcforest, icemelt, idem, ilc, imsig, intercure, ipred, ipw, ipwCoxCSV, IrregLong, ivtools, jomo, jskm, jsmodule, jstable, KMgene, kmi, KONPsurv, landest, landpred, lava, lillies, lodGWAS, longitudinalcascade, longROC, LTRCtrees, MachineShop, MAGNAMWAR, maxadjAUC, mboost, mccmeiv, Mediana, mephas, merlin, MetabolicSurv, metaRMST, mets, mice, miCoPTCM, MIICD, miWQS, mixPHM, mixtools, mlr, mlt, model4you, modeLLtest, mombf, momentuHMM, moonBook, mpr, msaenet, msm, msmtools, MTLR, mudens, muhaz, MXM, My.stepwise, nima, NNMIS, nparsurv, NPHazardRate, nsROC, numKM, obliqueRSF, ODS, OptimalTiming, orthoDr, pact, palasso, PAmeasures, pammtools, party, partykit, Patterns, pbatR, PDN, pec, permDep, personalized, Phase123, Plasmode, plsmselect, plsRcox, popEpi, powerSurvEpi, pre, prioritylasso, prodlim, pseval, psfmi, PTE, pubh, Publish, PWEALL, qgcomp, QTOCen, quickReg, rankhazard, RcmdrPlugin.KMggplot2, rcure, regplot, ReIns, remss, reportRx, rERR, riskRegression, RItools, rld, robustloggamma, rocTree, ROlogit, rolr, rpsftm, rpst, rstanarm, Rsurrogate, RVFam, SCCS, scRNAtools, SEERaBomb, sensitivityPStrat, sglg, shrink, SIDES, sievePH, SIGN, simexaft, SimHaz, simPH, SIS, skpr, smcfcs, SMPracticals, spatsurv, spBayesSurv, spef, SSRMST, stdReg, stpm, strataG, stratamatch, StratifiedMedicine, SubgrPlots, subtee, SUMMER, Sunclarco, Surrogate, SurrogateOutcome, SurrogateTest, surrosurv, surv2sampleComp, survAWKMT2, SurvCorr, SurvDisc, survELtest, survidm, survivalAnalysis, survivALL, survminer, survRM2adapt, survsup, survutils, survxai, SvyNom, tab, TBSSurvival, tfCox, TimeVTree, tram, TraMineRextras, tranSurv, TreatmentSelection, TSDT, TwoPhaseInd, TwoStepCLogit, utile.tables, uwIntroStats, valorate, VarReg, vennLasso, vpc, VRPM, WCE, weibulltools, WGCNA, WLreg, WRTDStidal, xlink, xpose4
Reverse suggests: agridat, aplore3, arsenal, ARTool, BB, BFpack, bnnSurvival, boot, boot, bpcp, breathtestcore, broom, butcher, BuyseTest, CALIBERrfimpute, car, catspec, choplump, climbeR, clinfun, ClinReport, confSAM, coreSim, DAAG, dawai, desctable, discSurv, dlnm, dnet, doBy, DySeq, epade, EstimationTools, exactRankTests, extremefit, FastKM, flexmix, fluoSurv, forestmodel, FRESA.CAD, gamair, gamboostLSS, gamlss.inf, gap, genSurv, GGally, ggeffects, ggformula, ggfortify, ggstatsplot, glmnet, glmulti, Greg, grImport, grpreg, h2o, heemod, highcharter, homomorpheR, HSAUR, HSAUR2, HSAUR3, HydeNet, insight, ISwR, itree, kernhaz, kyotil, lavaSearch2, lmtest, LogrankA, loose.rock, lss2, MARSS, MASS, MASS, maxstat, mc2d, MCPModGeneral, mediation, metaboGSE, metafor, mgcv, mgcv, mi, missRanger, mistat, mitml, mlt.docreg, MuMIn, ncvreg, netdiffuseR, npsm, nutshell, opera, optband, outreg, pander, parameters, parmsurvfit, parsnip, pder, pensim, performance, ph2bye, ph2mult, PINSPlus, pmml, PResiduals, purge, quantreg, qwraps2, R2HTML, randomForestSRC, ranger, rattle, reporttools, RLT, rpart, rpart, rsimsum, RVAideMemoire, sandwich, simex, simstudy, simsurv, sirus, smoothROCtime, SparkR, srvyr, subscreen, support.BWS, support.BWS2, support.BWS3, support.CEs, survtmle, tableone, tbm, texmex, texreg, tibbleOne, tidytidbits, timeROC, trtf, truncreg, tuneRanger, Umpire, utile.tools, utile.visuals, visreg, wally, xtable, ztable
Reverse enhances: denstrip, emmeans, papeR, prediction, qvcalc, stargazer

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