syntenyPlotteR: Genome Synteny Visualization

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

Version: 1.0.0
Imports: ggplot2, stringr, utils
Suggests: knitr, rmarkdown
Published: 2023-10-03
Author: Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut]
Maintainer: Marta Farre <m.farre-belmonte at kent.ac.uk>
BugReports: https://github.com/Farre-lab/syntenyPlotteR/issues
License: MIT + file LICENSE
NeedsCompilation: no
Citation: syntenyPlotteR citation info
Materials: README NEWS
CRAN checks: syntenyPlotteR results

Documentation:

Reference manual: syntenyPlotteR.pdf
Vignettes: SyntenyPlotteR - a tool for genome synteny visualisation

Downloads:

Package source: syntenyPlotteR_1.0.0.tar.gz
Windows binaries: r-prerel: syntenyPlotteR_1.0.0.zip, r-release: syntenyPlotteR_1.0.0.zip, r-oldrel: syntenyPlotteR_1.0.0.zip
macOS binaries: r-prerel (arm64): syntenyPlotteR_1.0.0.tgz, r-release (arm64): syntenyPlotteR_1.0.0.tgz, r-oldrel (arm64): syntenyPlotteR_1.0.0.tgz, r-prerel (x86_64): syntenyPlotteR_1.0.0.tgz, r-release (x86_64): syntenyPlotteR_1.0.0.tgz

Linking:

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