tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis.

Version: 0.36
Depends: R (≥ 2.10)
Imports: beeswarm, tagcloud, XML, methods, plotwidgets
Suggests: testthat, knitr, rmarkdown, pca3d, limma
Published: 2018-03-10
Author: January Weiner
Maintainer: January Weiner <january.weiner at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2.0)]
URL: http://bioinfo.mpiib-berlin.mpg.de/tmod/
NeedsCompilation: no
Materials: NEWS ChangeLog
CRAN checks: tmod results

Downloads:

Reference manual: tmod.pdf
Vignettes: Transcriptional Modules Enrichment Analysis
Package source: tmod_0.36.tar.gz
Windows binaries: r-devel: tmod_0.36.zip, r-release: tmod_0.36.zip, r-oldrel: tmod_0.36.zip
OS X binaries: r-release: tmod_0.36.tgz, r-oldrel: tmod_0.36.tgz
Old sources: tmod archive

Reverse dependencies:

Reverse imports: disco

Linking:

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