treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.

Version: 0.2.0
Depends: limSolve (≥ 1.5.5.0)
Imports: ape (≥ 5.0)
Suggests: lubridate, ggplot2, foreach, iterators, mgcv, knitr, rmarkdown
Published: 2018-05-04
Author: Erik Volz [aut, cre]
Maintainer: Erik Volz <erik.volz at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: README
In views: Phylogenetics
CRAN checks: treedater results

Downloads:

Reference manual: treedater.pdf
Vignettes: H3N2
Package source: treedater_0.2.0.tar.gz
Windows binaries: r-devel: treedater_0.2.0.zip, r-release: treedater_0.2.0.zip, r-oldrel: treedater_0.2.0.zip
OS X binaries: r-release: treedater_0.2.0.tgz, r-oldrel: not available

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