utr.annotation: Annotate Variants in the Untranslated Regions

A fast, user-friendly tool for annotating potential deleterious variants in the untranslated regions for both human and mouse species. Y Liu, JD Dougherty (2021) <doi:10.1101/2021.06.23.449510>.

Version: 1.0.3
Depends: R (≥ 3.5.0)
Imports: parallel, doParallel, data.table, readr, stringr, biomaRt, vcfR, Biostrings, dplyr, tidyr, keras, AnnotationHub, ensembldb, AnnotationFilter, BiocGenerics, GenomicFeatures, GenomicRanges, IRanges, foreach, rtracklayer, stats, utils, xml2
Suggests: testthat, knitr, rmarkdown, ggplot2
Published: 2021-07-01
Author: Yating Liu ORCID iD [aut, cre], Joseph D. Dougherty ORCID iD [aut]
Maintainer: Yating Liu <yatinghust at gmail.com>
License: GPL (≥ 3)
NeedsCompilation: no
SystemRequirements: Linux or MacOS Intel chip tensorflow (1.14.0)
Materials: README NEWS
CRAN checks: utr.annotation results

Downloads:

Reference manual: utr.annotation.pdf
Vignettes: Introduction
Package source: utr.annotation_1.0.3.tar.gz
Windows binaries: r-devel: utr.annotation_1.0.3.zip, r-release: utr.annotation_1.0.3.zip, r-oldrel: utr.annotation_1.0.3.zip
macOS binaries: r-release (arm64): not available, r-release (x86_64): utr.annotation_1.0.3.tgz, r-oldrel: utr.annotation_1.0.3.tgz

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